Physically-Based Simulation and Web Visualization of C. elegans Behavioural Experiments

Authors: Andoni Mujika Amunarriz Gorka Epelde Unanue Peter Leškovský David Oyarzun Laura

Date: 15.01.2016


PDF

Abstract

This paper presents the work done in the framework of the Si elegans project to develop the physics engine for the simulation of the roundworm Caenorhabditis elegans and the interfaces to define and visualize behavioural experiments of the worm. The physically-based simulation of the locomotion of the worm is guided by a biomechanical model, based on anatomically matched biphasic springs. The simulation is presented via an experiment visualization web, using a 3D motion reproduction obtained through animation bones. This web also displays information about the activation in muscles and neurons, on additional information panels. Finally, an experiment definition portal has been developed where, by means of a timeline, the user can easily design complex experimental assays.

BIB_text

@Article {
title = {Physically-Based Simulation and Web Visualization of C. elegans Behavioural Experiments},
pages = {19-29},
volume = {12},
keywds = {

WebGl visualization Physically-based simulation Caenorhabditis elegans


}
abstract = {

This paper presents the work done in the framework of the Si elegans project to develop the physics engine for the simulation of the roundworm Caenorhabditis elegans and the interfaces to define and visualize behavioural experiments of the worm. The physically-based simulation of the locomotion of the worm is guided by a biomechanical model, based on anatomically matched biphasic springs. The simulation is presented via an experiment visualization web, using a 3D motion reproduction obtained through animation bones. This web also displays information about the activation in muscles and neurons, on additional information panels. Finally, an experiment definition portal has been developed where, by means of a timeline, the user can easily design complex experimental assays.


}
isbn = {978-3-319-26242-0},
doi = {10.1007/978-3-319-26242-0_2},
date = {2016-01-15},
year = {2016},
}
Vicomtech

Parque Científico y Tecnológico de Gipuzkoa,
Paseo Mikeletegi 57,
20009 Donostia / San Sebastián (Spain)

+(34) 943 309 230

Zorrotzaurreko Erribera 2, Deusto,
48014 Bilbao (Spain)

close overlay

Behavioral advertising cookies are necessary to load this content

Accept behavioral advertising cookies